ABCpred
|
Mapping of B-cell epitope(s) in an antigen sequence, using artificial neural network.
|
Prof. GPS Raghava
|
ABMpred
|
Prediction of AntiBacterial Compounds against MurA Enzyme.
|
Prof. GPS Raghava
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ABSource
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All possible information regarding the antibodies.
|
Prof. GPS Raghava
|
ADPint |
Predicion of ADP interacting residue. |
Prof. GPS Raghava |
AHTPDB |
Database of antihypertensive peptides. |
Prof. GPS Raghava |
AHTpin |
Designing and virtual screening of antihypertensive peptides. |
Prof. GPS Raghava |
ALGpred |
Prediction of allergenic proteins and mapping of IgE epitopes in antigens. |
Prof. GPS Raghava |
ALPHApred |
A neural network based method for predicting alpha-turn in a protein. |
Prof. GPS Raghava |
AntiAngioPred |
A Server for Prediction of Anti-Angiogenic Peptides. |
Prof. GPS Raghava |
AntiBP |
Mapping of antibacterial peptides in a protein sequence. |
Prof. GPS Raghava |
AntiBP2 |
Mapping of antibacterial peptides in a protein sequence. |
Prof. GPS Raghava |
AntiCP |
Prediction and design of anticancer peptides. |
Prof. GPS Raghava |
AntiFP |
Prediction and design of antifungal peptides. |
Prof. GPS Raghava |
AntigenDB |
An immunoinformatics database of pathogen antigens. |
Prof. GPS Raghava |
AntiMPmod |
Prediction of modified antimicrobial peptides. |
Prof. GPS Raghava |
AntiTbPdb |
A database of anti-tubercular peptides. |
Prof. GPS Raghava |
ApoCanD |
Database of Human Apoptotic Proteins in the context of cancer. |
Prof. GPS Raghava |
APSSP |
Advanced Protein Secondary Structure Prediction Server. |
Prof. GPS Raghava |
APPSP2 |
Prediction of secondary structure of proteins from their amino acid sequence. |
Prof. GPS Raghava |
AR_NHpred |
Identification of aromatic-backbone NH interaction in protein residues. |
Prof. GPS Raghava |
ABCpred |
Mapping of B-cell epitope(s) in an antigen sequence, using artificial neural network. |
Prof. GPS Raghava |
ATPint |
Identification of ATP binding sites in ATP-binding proteins. |
Prof. GPS Raghava |
BCEpred |
Prediction of linear B-cell epitopes, using Physico-chemical properties. |
Prof. GPS Raghava |
Bcipep |
Collection & compilation of B-cell epitopes from literature. |
Prof. GPS Raghava |
BetaTPred |
Statistical-based method for predicting Beta Turns in a protein. |
Prof. GPS Raghava |
BetaTPred2 |
Updated statistical-based method for predicting Beta Turns in a protein. |
Prof. GPS Raghava |
BetaTPred3 |
Propensity based prediction of beta turns and their types. |
Prof. GPS Raghava |
BetaTurns |
Prediction of beta turn types. |
Prof. GPS Raghava |
BhairPred |
Prediction of beta hairpins in proteins using ANN and SVM techniques. |
Prof. GPS Raghava |
BIAdb |
A Database for Benzylisoquinoline Alkaloids. |
Prof. GPS Raghava |
BioTherapi |
Bioinformatics for Therapeutic Peptides and Proteins. |
Prof. GPS Raghava |
BTEval |
Evaluation of beta-turns prediction methods. |
Prof. GPS Raghava |
BTXpred |
A server for predicting bacterial toxins. |
Prof. GPS Raghava |
CancerCSP |
Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer. |
Prof. GPS Raghava |
CancerDP |
Prioritization of anticancer drugs against a cancer using genomic features of cancer cells. |
Prof. GPS Raghava |
CancerDR |
Cancer drug resistance database. |
Prof. GPS Raghava |
CanceRES |
Cancer Informatics Portal. |
Prof. GPS Raghava |
CancerIN |
A web server for predicting anticancer activity of molecules. |
Prof. GPS Raghava |
CancerPDF |
Database of cancer-associated peptides of human bodyfluids. |
Prof. GPS Raghava |
CancerPPD |
Database of anticancer peptides and proteins. |
Prof. GPS Raghava |
CancerPred |
Prediction of the cancerlectins. |
Prof. GPS Raghava |
CancerSmell |
CancerSmell |
Dr. Gaurav Ahuja |
CancerTope |
A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer. |
Prof. GPS Raghava |
CancerUBM |
Web bench for analysis of proteomics data and prediction of cancer status of a urine samples. |
Prof. GPS Raghava |
CBTOPE |
Conformational B-cell Epitope prediction. |
Prof. GPS Raghava |
CCDB |
Database of genes involved in Cervix Cancer. |
Prof. GPS Raghava |
ccPDB 2.0 |
Compilation and Creation of datasets from PDB. |
Prof. GPS Raghava |
CellAtlasSearch |
Single cell search engine. |
Dr. Debarka Sengupta |
CellPPD |
Computer-aided Designing of efficient cell penetrating peptides. |
Prof. GPS Raghava |
ChemoPred |
A server to predict chemokines and their receptor |
Prof. GPS Raghava |
ChloroPred |
Prediction of chloroplast proteins. |
Prof. GPS Raghava |
CHpredict |
Prediction of CH-O, CH-PI interactions in backbone residues of a protein |
Prof. GPS Raghava |
Codon |
Plot Graph for Codon Composition (from standard codon usage table) Vs Codons. |
Prof. GPS Raghava |
COPid |
Composition based identification and classification of proteins. |
Prof. GPS Raghava |
CoronaActionIndia |
An initiative to tackle Covid19 in India. |
Dr. Tavpritesh Sethi |
Covid NLP |
Text Summarization. |
Dr. Tavpritesh Sethi |
CPPsite |
A web page for cell penetrating peptides. |
Prof. GPS Raghava |
CPPsite 2.0 |
A database of experimentally validated natural and modified cell penetrating Peptides. |
Prof. GPS Raghava |
CRDD |
Computational resources for drug discovery. |
Prof. GPS Raghava |
CRIP |
Computational Resources for molecular Interaction Prediction. |
Prof. GPS Raghava |
CTLpred |
A direct method for prediction of CTL epitopes. |
Prof. GPS Raghava |
CytoPred |
It is a webserver for prediction and classification of cytokines. |
Prof. GPS Raghava |
CyclinPred |
CyclinPred is a SVM based prediction method to identify novel cyclins. |
Prof. GPS Raghava |
DADPred |
Prediction of drugs against aspartate semialdehyde dehydrogenase of DAP pathway. |
Prof. GPS Raghava |
DAMpro |
Disease Associated Mutations in Proteins. |
Prof. GPS Raghava |
dbEM |
A Database of Epigenetic Modifiers |
Prof. GPS Raghava |
desiRam |
Designing of highly efficient siRNA with minimum mutation approach. |
Prof. GPS Raghava |
Dfilter |
Signal detection and estimation using next-gen sequencing data. |
Dr. Vibhor Kumar |
DiPCell |
Designing of inhibitors against pancreatic cancer cell lines. |
Prof. GPS Raghava |
DMKPred |
A webserver for the prediction of binding of chemical molecules with specific kinases. |
Prof. GPS Raghava |
DNAbinder |
A webserver for predicting DNA-binding proteins. |
Prof. GPS Raghava |
DNAint |
Prediction of DNA Interacting Residues. |
Prof. GPS Raghava |
DNAsize |
Computation of size of DNA and Protein Fragments from Their Electrophoretic Mobility. |
Prof. GPS Raghava |
DOMprint |
SVM based model for predicting domain-domain interaction (DDI). |
Prof. GPS Raghava |
DPROT |
SVM-based method for predicting of disordered proteins. |
Prof. GPS Raghava |
dropClust |
Efficient clustering of Drop-seq data. |
Dr. Debarka Sengupta |
DrugMint |
A web server for identification of drug like molecules. |
Prof. GPS Raghava |
EbolaVCR |
A web-based resource for designing therapeutics against Ebola Virus. |
Prof. GPS Raghava |
ECDB |
Endometrial cancer gene database. |
Prof. GPS Raghava |
ECGPred |
Analsis of expresion data and correlation between gene expression and nucleotides composition of genes. |
Prof. GPS Raghava |
Efilter |
Signal detection and estimation using next-gen sequencing data. |
Dr. Vibhor Kumar |
EGFRindb |
A database of EGF(Epidermal Growth Factor) receptors (anticaner database). |
Prof. GPS Raghava |
EGFRPred |
A web service for the predicting and designing of inhibitors against EGFR (anticancer drugs). |
Prof. GPS Raghava |
EGPred |
Prediction of gene (protein coding regions) in eukaryote genomes that includes introns/exons. |
Prof. GPS Raghava |
ESLPred |
Subcellular localization of the eukaryotic proteins using dipeptide compostion and PSI-BLAST. |
Prof. GPS Raghava |
ESLPred2 |
Advanced method for subcellular localization of eukaryotic proteins. |
Prof. GPS Raghava |
FADPred |
A webserver for the prediction of FAD interacting residues. |
Prof. GPS Raghava |
FiRE |
Fast rare cell discovery from single cell RNA-Seq. |
Dr. Debarka Sengupta |
FiSiPred |
Phi-Psi angle prediction using average angle prediction technique. |
Prof. GPS Raghava |
FOCS |
Overlapping graph clustering. |
Dr. Debarka Sengupta |
FTG |
Locating probable protein coding region in nucleotide sequence using FFT based algorithm. |
Prof. GPS Raghava |
FTGPred |
Gene Identification using Fourier Transformation. |
Prof. GPS Raghava |
GammaPred |
Identification of gamma-turn containing residues in a given protein sequence. |
Prof. GPS Raghava |
GDoQ |
iPrediction of GLMU inhibitors (anti-tubeculosis inhibitors) using QSAR and docking apprach. |
Prof. GPS Raghava |
GeneBench |
A suite of tools and datasets for benchmarking gene finders. |
Prof. GPS Raghava |
Genomeabc |
GenomeABC is a web server for evaluating the performance of genome assemblers. |
Prof. GPS Raghava |
GlycoEP |
Prediction of C-, N- and O-glycosylation site in eukaryotic proteins. |
Prof. GPS Raghava |
GlycoPP |
Prediction of potential N-and O-glycosites in prokaryotic proteins. |
Prof. GPS Raghava |
GMPEsi |
Generalized Model for Predicting Efficacy of siRNAs. |
Prof. GPS Raghava |
GPCRpred |
Prediction of families and superfamilies of G-protein coupled receptors (GPCR). |
Prof. GPS Raghava |
GPCRsclass |
This webserver predicts amine type of G-protein coupled receptors. |
Prof. GPS Raghava |
GPSR |
A resource for genomocs, proteomics and system biology. |
Prof. GPS Raghava |
GSTPred |
SVM-based method for predicting Glutathione S-transferase protein. |
Prof. GPS Raghava |
GTPbinder |
Identification of GTP binding residue in protein sequences. |
Prof. GPS Raghava |
GDPbio |
Genome based prediction of Diseases and Personal Medicine |
Prof. GPS Raghava |
HaptenDB |
A database of haptens, provide comprehensive information about the hapten molecule. |
Prof. GPS Raghava |
Hemolytik |
A repository of experimentally validated hemolytic and non-hemolytic peptides. |
Prof. GPS Raghava |
HemoPI |
Prediction and virtual screening of hemolytic peptides. |
Prof. GPS Raghava |
HerceptinR |
Information about assays performend to test sensitivity/resistance of Herceptin Antibodies. |
Prof. GPS Raghava |
HIVbio |
HIV related bioinformatics resources. |
Prof. GPS Raghava |
HIVcoPred |
Predicting coreceptor used by HIV-1 from Its V3 loop amino acid sequence. |
Prof. GPS Raghava |
HIVFin |
Prediction of Fusion Inhibitors against HIV (drugs against HIV). |
Prof. GPS Raghava |
HIVint |
Prediction of protein-protein interaction between HIV and Human proteins. |
Prof. GPS Raghava |
HIVsirDB |
A manually curated database of anti-HIV siRNAs. |
Prof. GPS Raghava |
HLA-DR4Pred |
Identification of HLA-DRB1*0401(MHC class II alleles) binding peptides. |
Prof. GPS Raghava |
HLAPred |
Identification and prediction of HLA class I and class II Binders. |
Prof. GPS Raghava |
HLP |
A webserver for predicting half-life of peptides in intestine like environment. |
Prof. GPS Raghava |
HMRbase |
A manually curated database of hormones and their Receptors. |
Prof. GPS Raghava |
HSLPred |
Prediction of subcellular localization of human proteins with high accuracy. |
Prof. GPS Raghava |
HumCFS |
A database of fragile sites in human chromosome. |
Prof. GPS Raghava |
icaars |
Identification & Classification of Aminoacyl tRNA Synthetases. |
Prof. GPS Raghava |
IFNepitope |
A server for predicting and designing interferon-gamma inducing epitopes. |
Prof. GPS Raghava |
IgPred |
Prediction of antibody specific B-cell epitope. |
Prof. GPS Raghava |
IL10Pred |
Prediction of Interleukin-10 inducing peptides. |
Prof. GPS Raghava |
IL4Pred |
In silico platform for designing and disovering of Interleukin-4 inducing peptides. |
Prof. GPS Raghava |
imRNA |
Prediction of Immunomodulatory RNAs. |
Prof. GPS Raghava |
ISSPred |
Prediction of Intein Splice Site. |
Prof. GPS Raghava |
KetoDrug |
A web server for binding affinity prediction of ketoxazole derivatives against Fatty Acid Amide Hydrolase (FAAH) |
Prof. GPS Raghava |
KiDoQ |
Prediction of inhibition against dihydrodipicolinate synthase of M. Tuberculosis. |
Prof. GPS Raghava |
LBtope |
A server for predicting linear B-cell epitopes. |
Prof. GPS Raghava |
LGEpred |
Correlation analysis and prediction of genes expression from amino acid sequence of proteins. |
Prof. GPS Raghava |
LPIcom |
Analysis and prediction of ligand protein interaction. |
Prof. GPS Raghava |
LSPCA |
Structure preserving principal component analysis. |
Dr. Debarka Sengupta |
MANGO |
Prediction of Protein Function from Manually Annotated proteins based on GO (Gene Ontology). |
Prof. GPS Raghava |
MARSpred |
Prediction of mitochondrial aminoacyl tRNA synthetases. |
Prof. GPS Raghava |
MDRIpred |
Predicting inhibitor against drug tolrent M.Tuberculosis. |
Prof. GPS Raghava |
MDL-histo |
A generalized non-parametric method for feature selection. |
Dr. Vibhor Kumar |
MetaPred |
Prediction of Cytochrome P450 Isoform responsible for metabolizing a drug molecule. |
Prof. GPS Raghava |
MHCBN 4.0 |
A database of MHC/TAP binding peptides and T-cell epitopes. |
Prof. GPS Raghava |
MitPred |
Prediction of mitochondrial proteins using SVM and hidden Markov model. |
Prof. GPS Raghava |
MtbWeb |
A webportal for designing vaccine against drug resistant and emerging strains of M. tuberculosis. |
Prof. GPS Raghava |
MycoPrInt |
A tool fort exploration of the interactome of Mycobacterium tuberculosis. |
Prof. GPS Raghava |
MycoTB |
A software for managing mycobacterium tuberculosis. |
Prof. GPS Raghava |
NADbinder |
Prediction of NAD interacting residues in proteins. |
Prof. GPS Raghava |
NAGbinder |
Prediction of NAG interacting residues in proteins. |
Prof. GPS Raghava |
nHLAPred |
A neural network based method for predicting MHC Class-I binders. |
Prof. GPS Raghava |
NPACT |
A curated database of plant derived natural compounds that exhibit anti-cancerous activity. |
Prof. GPS Raghava |
NpPred |
A webserver for the prediction of nuclear proteins. |
Prof. GPS Raghava |
NRpred |
A SVM based method for the classification of nuclear receptors. |
Prof. GPS Raghava |
ntEGFR |
QSAR-Based Models for designing inhibitors against Wild and Mutant EGFR (anti-cancer drug). |
Prof. GPS Raghava |
NTXpred |
Identification of neurotoxins their source and function from primary amino acid sequence. |
Prof. GPS Raghava |
OFS |
Online feature selection. |
Dr. Debarka Sengupta |
OrSurv |
OrSurv |
Dr. Gaurav Ahuja |
OSCADD |
Open Source for Computer-Aided Drug Discovery portal is for chemoinformatics and pharmacoinformatics. |
Prof. GPS Raghava |
OSDDChem |
A interface for large scale synthesis of diverse chemical compounds to screen them against TB and Malaria. |
Prof. GPS Raghava |
OSDDlinux |
A customize operating system for drug discovery. |
Prof. GPS Raghava |
OxDBase |
A database of Biodegradative oxygenase. |
Prof. GPS Raghava |
OxyPred |
Classification and prediction of oxygen binding proteins. |
Prof. GPS Raghava |
PAAINT |
A webservice for predicting residue-residue contacts in proteins. |
Prof. GPS Raghava |
ParaPep |
Compilation of experimentally validated anti-parasitic peptides and their structures. |
Prof. GPS Raghava |
ParSel |
Feature selection for improved survival prediction. |
Dr. Debarka Sengupta |
Pcleavage |
Identification of protesosomal cleavage sites in a protein sequence. |
Prof. GPS Raghava |
PCMDB |
A database of methylated genes found in pancreatic cancer cell lines and tissues. |
Prof. GPS Raghava |
PElife |
Database of experimentally validated therapeutic peptides and their half lives. |
Prof. GPS Raghava |
PEPstrMOD |
Structural prediction of peptides containing natural, non-natural and modified residues. |
Prof. GPS Raghava |
PFMpred |
Predicting mitochondrial proteins of malaria parasite Plasmodium falciparum. |
Prof. GPS Raghava |
PHDcleav |
Prediction of human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. |
Prof. GPS Raghava |
Phytochemica |
A platform to explore phytochemicals of medicinal plants. |
Dr. Ganesh Bagler |
PLDBench |
Benchmarking of docking software on peptide-ligand complexes. |
Prof. GPS Raghava |
PlifePred |
An insilico method to design and predict the half life of modified and natural peptides in blood. |
Prof. GPS Raghava |
PolyApred |
Prediction of polyadenylation signal (PAS) in human DNA sequence. |
Prof. GPS Raghava |
PolysacDB |
A comprehensive Database of microbial Polysaccharide antigens and their antibodies. |
Prof. GPS Raghava |
PPDBench |
Benchmarking of docking software on protein-peptide complexes. |
Prof. GPS Raghava |
PPRint |
A web-server for predicting RNA-binding residues of a protein. |
Prof. GPS Raghava |
PreMieR |
A webserver for the prediction of Mannose Interacting residue. |
Prof. GPS Raghava |
ProClass |
protein structure classification server. |
Prof. GPS Raghava |
ProCarDB |
A database of bacterial carotenoids. |
Prof. GPS Raghava |
ProGlycProt |
Database of experimentally characterized eubacterial and archaeal glycoproteins. |
Prof. GPS Raghava |
ProPred |
A webserver to predict MHC Class-II binding regions in an antigen sequence. |
Prof. GPS Raghava |
ProPred-1 |
Prediction of promiscuous MHC Class-I binders. |
Prof. GPS Raghava |
ProPrInt |
A web-server predicts physical or functional interactions between protein molecules. |
Prof. GPS Raghava |
PRRDB |
A database of pattern recognition receptor. |
Prof. GPS Raghava |
PSAweb |
Analysis of Protein Sequence and Multiple Alignment. |
Prof. GPS Raghava |
PSEApred |
Prediction of Plasmodium Secretory and Infected Erythrocyte Associated Proteins. |
Prof. GPS Raghava |
PSLpred |
Predict subcellular localization of prokaryotic proteins. |
Prof. GPS Raghava |
QASpro |
A webserver for the Quality Assesment of Protein Structure. |
Prof. GPS Raghava |
RA |
Kemeny Optimal Rank Aggregation. |
Dr. Debarka Sengupta |
RBpred |
A weather based rice blast prediction server. |
Prof. GPS Raghava |
RCA |
Noise free single cell clustering (Shyam Prabhakar’s lab). |
Dr. Debarka Sengupta |
RNAcon |
A web-server for the prediction and classification of non-coding RNAs. |
Prof. GPS Raghava |
RNAint |
Identification of RNA interacting residues in a protein. |
Prof. GPS Raghava |
RNApin |
Prediction of Protein Interacting Nucleotides (PINs) in RNA sequences. |
Prof. GPS Raghava |
RNApred |
A webserver for the prediction of RNA binding proteins. |
Prof. GPS Raghava |
RRCpred |
A Webserver for predicting residue-residue contact. |
Prof. GPS Raghava |
RSLpred |
A method for the subcellular localization prediction of rice proteins. |
Prof. GPS Raghava |
SAPdb |
A database of nanostructure formed by self assembly of short peptide. |
Prof. GPS Raghava |
SARpred |
A neural network based method predicts the real value of surface acessibility. |
Prof. GPS Raghava |
SATPdb |
A database of structurally annotated therapeutic peptides. |
Prof. GPS Raghava |
SerpentinaDB |
A Database of Plant-Derived Molecules of Rauvolfia serpentina. |
Dr. Ganesh Bagler |
siRNAPred |
SVM based method for predicting efficacy value of siRNA. |
Prof. GPS Raghava |
SRF |
A program to find repeats through an analysis of the power spectrum of a given DNA sequence. |
Prof. GPS Raghava |
SRTPred |
A method for the classification of protein sequence as secretory or non-secretory protein. |
Prof. GPS Raghava |
StarPDB |
A webserver for annotating structure of a protein using simililarity based approach. |
Prof. GPS Raghava |
TAPPred |
A webserver for predicting binding affinity of peptides toward the TAP transporter. |
Prof. GPS Raghava |
TBBPred |
A webserver for the prediction of transmembrane Beta barrel regions in a given protein sequence. |
Prof. GPS Raghava |
TBPred |
A webserver that predicts four subcellular localization of mycobacterial proteins. |
Prof. GPS Raghava |
THPdb |
A database of FDA approved therapeutic peptides and proteins. |
Prof. GPS Raghava |
TLR4HI |
SVM based model for computing inhbitors against human TLR4 (Toll like receptor). |
Prof. GPS Raghava |
TopicalPdb |
A Database of Topically Administered Peptide. |
Prof. GPS Raghava |
ToxinPred |
An in silico method, which is developed to predict and design toxic/non-toxic peptides. |
Prof. GPS Raghava |
ToxiPred |
A server for prediction of aqueous toxicity of small chemical molecules in T. pyriformis. |
Prof. GPS Raghava |
tRNAmod |
The tRNAmod is a web-server for the prediction of transfer RNA (tRNA) modifications. |
Prof. GPS Raghava |
TSPPRED |
A webservice for predicting Tertiary Structure of proteins. |
Prof. GPS Raghava |
TumorHoPe |
A comprehensive database of Tumor Homing Peptides. |
Prof. GPS Raghava |
TumorHPD |
A webserver for predicting and designing of tumor homing peptides. |
Prof. GPS Raghava |
VaccineDA |
A webserver for prediction of oligodeoxynucleotide vaccine adjuvant. |
Prof. GPS Raghava |
VaxinPAD |
A webserver for designing peptide based vaccine adjuvant. |
Prof. GPS Raghava |
VGIchain |
Voltage gated ion channel prediction server. |
Prof. GPS Raghava |
VICMpred |
Prediction of Virulence factors, Information molecule, Cellular process and Metabolism molecule in the Bacterial proteins. |
Prof. GPS Raghava |
VitaPred |
A webserver for predicting the vitamin interacting residue. |
Prof. GPS Raghava |
WashKaro |
Spreading awareness among the mass regarding Water and Sanitation. |
Dr. Tavpritesh Sethi |
wiseR |
Bayesian Decision Network analysis and deployment. |
Dr. Tavpritesh Sethi |
XIAPin |
Designing of efficient inhibitors against apoptosis protein XIAP (inhibitor against drug resistance cancer). |
Prof. GPS Raghava |
ZikaVR
|
An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.
|
Prof. GPS Raghava
|